Spades-day2-pc.rar -

Match this to your CPU's physical cores to speed up the process (e.g., -t 4 ). 3. Focus on Scaffolds vs. Contigs

Activating the specific environment (e.g., conda activate micro612 ). SPADES-Day2-pc.rar

Set a limit in gigabytes (e.g., -m 8 for 8GB). Match this to your CPU's physical cores to

The most useful feature you should leverage for this topic is the during assembly. 1. Enable the Careful Assembly Mode SPADES-Day2-pc.rar

Using tools like Trimmomatic to clean your raw data before assembly.

Running the spades.py command on the cleaned "Day 2" datasets.